RegulonDB RegulonDB 11.1: Operon Form

sokB operon and associated TUs in Escherichia coli K-12 genome

Name: sokB
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: sokB
Gene(s): sokB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
[EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Kawano M., et al., 2005
Name: sokBp
+1: 1492119
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 0
Sequence: ggttgtgcttcatagcctttctccttgccggatggcgggtaagaggctaagatctgaattGctaggttcattcgttggcct
                         -35                    -10         +1                   
Evidence: [COMP-HINF]
Reference(s): [2] Pedersen K., et al., 1999

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -16.8 1492072 1492106 gtgcttcataGCCTTTCTCCTTGCCGGATGGCGGGTAAGAGGCTaagatctgaa
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"