RegulonDB RegulonDB 10.7: Operon Form
   

sokB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sokB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Gene(s): sokB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[LTED] Length of transcript experimentally determined
Reference(s): [1] Kawano M., et al., 2005
Promoter
Name: sokBp
+1: 1492119
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 0
Sequence: ggttgtgcttcatagcctttctccttgccggatggcgggtaagaggctaagatctgaattGctaggttcattcgttggcct
                         -35                    -10         +1                   
Evidence: [TIM]
Reference(s): [2] Pedersen K., et al., 1999


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: forward
Evidence: [ICA] Inferred by computational analysis
Reference(s): [3] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -16.8 1492072 1492106 gtgcttcataGCCTTTCTCCTTGCCGGATGGCGGGTAAGAGGCTaagatctgaa
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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