RegulonDB RegulonDB 10.10: Operon Form

ydfI operon and associated TUs in Escherichia coli K-12 genome

Name: ydfI
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: ydfI
Gene(s): ydfI   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [1] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -16.7 1630962 1630995 gtaaacccttAATCCCTTCTCTTACCGGAGAGGGGATTTTTATtcatataaca
  anti-terminator -6.55 1630981 1631034 accgcgtgttGTAAGAGCTGCGCAACCTTCCAGAAGTCTGTAAACCCTTAATCCCTTCTCTTAccggagaggg
  anti-anti-terminator -18.6 1631012 1631067 tttaagtgcgCTGGAAGACGCTGCGGAAGATCAACCGCGTGTTGTAAGAGCTGCGCAACCTTCCAgaagtctgta
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"