RegulonDB RegulonDB 10.8: Operon Form
   

ycbJ operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ycbJ
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ycbJ
Gene(s): ycbJ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: ycbJp
+1: 971672
Distance from start of the gene: 80
Sequence: cacttcagccaattttgggaggagtgtcgtaccgttacgattttcctcaatttttcttttCaacaattgatctcattcagg
Evidence: [HTIM]
Reference(s): [1] Mendoza-Vargas A., et al., 2009


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -13.4 971630 971671 caattttgggAGGAGTGTCGTACCGTTACGATTTTCCTCAATTTTTCTTTTcaacaattga
  anti-terminator -17.0 971608 971641 tttcacttcaCGACACTTCAGCCAATTTTGGGAGGAGTGTCGTaccgttacga
  anti-anti-terminator -17.62 971548 971621 cctggcacagGTGTGGATACCCCTGAAGATCTTGAGCGCGTTCGCGCTGAAATGCGCTAATTTCACTTCACGACACTTCAGCCaattttggga
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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