RegulonDB RegulonDB 10.8: Operon Form
   

yccT operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yccT
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yccT
Gene(s): yccT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[ICWHO] Inferred computationally without human oversight
Reference(s): [1] Ogasawara H., et al., 2011
Promoter
Name: yccTp
+1: 1027837
Distance from start of the gene: 64
Sequence: aaccatgcagctaatacgaatgaatgagagcaaaagcgggaaatatgtctatatgttagtAagtatgattaaagaaaaatt
Evidence: [TIM]
Reference(s): [1] Ogasawara H., et al., 2011
TF binding sites (TFBSs)
[CsgD,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CsgD activator yccTp 1027873 1027887 -42.5 aaccatgcagCTAATACGAATGAATgagagcaaaa nd [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] [1]


Evidence    

 [TIM] Transcription initiation mapping

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [BPP] Binding of purified proteins

 [CV(GEA)] cross validation(GEA)

 [GEA] Gene expression analysis


Reference(s)    

 [1] Ogasawara H., Yamamoto K., Ishihama A., 2011, Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis., J Bacteriol 193(10):2587-97

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