RegulonDB RegulonDB 10.8: Operon Form
   

ymcE-gnsA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ymcE-gnsA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: gnsA
Gene(s): gnsA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IEP] Inferred from expression pattern
Reference(s): [1] Li Z., et al., 2019
Promoter
Name: gnsAp2
+1: 1051999
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 68
Sequence: aagcgataacctgttgattattgaatctttcggggagatggcttataacatttcttacctGaccagggtaccgggaaccaa
                     -35                           -10      +1                   
Evidence: [RE]
[TIM]
Reference(s): [1] Li Z., et al., 2019


Transcription unit       
Name: gnsA
Gene(s): gnsA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IEP] Inferred from expression pattern
Reference(s): [1] Li Z., et al., 2019
Promoter
Name: gnsAp
+1: 1052004
Sigma Factor: Sigma54 Sigmulon
Distance from start of the gene: 63
Sequence: ataacctgttgattattgaatctttcggggagatggcttataacatttcttacctgaccaGggtaccgggaaccaacacct
                                  -24         -12           +1                   
Evidence: [RE]
[TIM]
Reference(s): [1] Li Z., et al., 2019


Transcription unit       
Gene(s): ymcE, gnsA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


Evidence    

 [RE] RNA-seq evidence

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Li Z., Pan Q., Xiao Y., Fang X., Shi R., Fu C., Danchin A., You C., 2019, Deciphering global gene expression and regulation strategy in Escherichia coli during carbon limitation., Microb Biotechnol 12(2):360-376

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