RegulonDB RegulonDB 11.1: Operon Form

wrbA-yccJ operon and associated TUs in Escherichia coli K-12 genome

Name: wrbA-yccJ
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: wrbA-yccJ
Gene(s): yccJ, wrbA   Genome Browser M3D Gene expression COLOMBOS
Note(s): The wrbA gene is upregulated by long-term (8 to 12 h) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020.
Evidence: [COMP-AINF] Inferred computationally without human oversight
Name: wrbAp
+1: 1067758
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 50
Sequence: ataaatcaaataagtggttgtgaaatttgcactctgaaaaggacgtcttatctttaaataAgtggtagcgaatcgctacgg
                                -35                    -10  +1                   
Evidence: [COMP-HINF]
Reference(s): [1] Dudin O., et al., 2013
[2] Mendoza-Vargas A., et al., 2009
[3] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CsgD activator wrbAp 1067866 1067880 -114.5 tatgattaaaAAAACGCGATGAGATaaaaatgtgt nd [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] nd [4]
remote CsgD activator wrbAp 1067888 1067902 -136.5 ataattatccATAAGCCGCTCTTATgattaaaaaa nd [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] nd [4]
remote CsgD activator wrbAp 1067918 1067932 -166.5 gcttcttagcGAGAATAGATATCATctccaataat nd [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] nd [4]