Name: |
ycdZ |
Gene(s): |
ycdZ
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
The functions of the CRP and CytR transcriptional regulator (CRP-CytR-CRP system) were added based on the behavior of this system in Escherichia coli Sernova NV,2012 |
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
ycdZp4 |
+1: |
1100252 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
44
|
Sequence: |
taagtgtgatctacgtcactcataactgcaacggataatttgttgttgcataaaatgtgtGctcgatctcattcatggccg -35 -10 +1
|
Evidence: |
[ICWHO]
|
Reference(s): |
[1] Huerta AM., et al., 2003
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
CytR
|
repressor |
ycdZp4 |
1100216
|
1100244
|
-22.0
|
gtcactcataACTGCAACGGATAATTTGTTGTTGCATAAaatgtgtgct |
nd
|
[AIBSCS]
|
[2]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
CRP-cyclic-AMP |
activator |
ycdZp4 |
1100193
|
1100215
|
-48.0
|
tctgaagaatAAGTGTGATCTACGTCACTCATAactgcaacgg
|
nd
|
[2]
|
CRP-cyclic-AMP |
repressor |
ycdZp4 |
1100193
|
1100215
|
-48.0
|
tctgaagaatAAGTGTGATCTACGTCACTCATAactgcaacgg
|
nd
|
[2]
|
CytR |
repressor |
ycdZp4 |
1100216
|
1100244
|
-22.0
|
gtcactcataACTGCAACGGATAATTTGTTGTTGCATAAaatgtgtgct
|
nd
|
[2]
|
CRP-cyclic-AMP |
activator |
ycdZp4 |
1100244
|
1100266
|
4.0
|
ttgttgcataAAATGTGTGCTCGATCTCATTCAtggccgcgtt
|
[GEA]
|
[2], [3]
|
CRP-cyclic-AMP |
repressor |
ycdZp4 |
1100244
|
1100266
|
4.0
|
ttgttgcataAAATGTGTGCTCGATCTCATTCAtggccgcgtt
|
[GEA]
|
[2], [3]
|