RegulonDB RegulonDB 10.10: Operon Form
   

dinI operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: dinI
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: dinI
Gene(s): dinI   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: dinIp
+1: 1121509
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 22
Sequence: aaacaataaaaatcgtagcttcctgttgtcattaggttattttacctgtataaataaccaGtatattcaacagggggctat
                                                 -10        +1                   
Evidence: [HTTIM]
[IHBCE]
Reference(s): [1] Maciag A., et al., 2011
[2] Yasuda T., et al., 1996
TF binding sites (TFBSs)
[LexA,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor dinIp 1121507 1121526 -7.5 aggttattttACCTGTATAAATAACCAGTAtattcaacag nd [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [IHBCE], [SM] [2], [3]
[NagC,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NagC repressor dinIp 1121512 1121534 -14.0 ttgtcattagGTTATTTTACCTGTATAAATAACcagtatattc nd [AIBSCS] nd


Evidence    

 [HTTIM] High-throughput transcription initiation mapping

 [IHBCE] Inferred by a human based on computational evidence

 [GEA] Gene expression analysis

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [BPP] Binding of purified proteins

 [SM] Site mutation


Reference(s)    

 [1] Maciag A., Peano C., Pietrelli A., Egli T., De Bellis G., Landini P., 2011, In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements., Nucleic Acids Res 39(13):5338-55

 [2] Yasuda T., Nagata T., Ohmori H., 1996, Multicopy suppressors of the cold-sensitive phenotype of the pcsA68 (dinD68) mutation in Escherichia coli., J Bacteriol 178(13):3854-9

 [3] Lewis LK., Harlow GR., Gregg-Jolly LA., Mount DW., 1994, Identification of high affinity binding sites for LexA which define new DNA damage-inducible genes in Escherichia coli., J Mol Biol 241(4):507-23

RegulonDB