RegulonDB RegulonDB 10.8: Operon Form
   

ybdN operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ybdN
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ybdN
Gene(s): ybdN   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: ybdNp
+1: 636686
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 117
Sequence: atttattgaccgtctaaatgagagtttttgatatataactacagacagctactataacttTcatctatttattcacagcgc
                            -35                   -10       +1                   
Evidence: [AIPP]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote ArcA-Phosphorylated activator ybdNp 636615 636629 64.5 acagtgtttaCTTTATAATTAACAGacttatctca nd [AIBSCS] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CysB-O-acetyl-L-serine activator ybdNp 636843 636885 -177.5 gatttactggGAATAGTCCCCTATGAACTTTATAATTCCTACCGTGACTTTCTtaacttaaaa nd [AIBSCS] [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR activator ybdNp 636706 636719 -26.5 atgagagtttTTGATATATAACTAcagacagcta nd [AIBSCS] [2]
remote FNR activator ybdNp 636983 636996 -303.5 tcagcaggggTTGATGATATTCAAatggaaatag nd [AIBSCS] [2]





RegulonDB