RegulonDB RegulonDB 10.8: Operon Form
   

ybiI operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ybiI
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ybiI
Gene(s): ybiI   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: ybiIp6
+1: 838484
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 28
Sequence: tggtcggagatctgatgcttgaactgcccgagttcgtccctggattagctacacttaactGtacaagtattgatatgggga
                                                -10         +1                   
Note(s): Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 7.31. P-value: 1.340e-5
Evidence: [ICWHO]
Reference(s): [1] Huerta AM., et al., 2003
[2] Peano C., et al., 2015


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Peano C., Wolf J., Demol J., Rossi E., Petiti L., De Bellis G., Geiselmann J., Egli T., Lacour S., Landini P., 2015, Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis., Sci Rep 5:10469

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