RegulonDB RegulonDB 10.7: Operon Form
   

yagK operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yagK
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Gene(s): yagK   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: yagKp6
+1: 293118
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 170
Sequence: caggctggggctaccttcgtctcaaatttagatgttggataggtattatataatggcattGtgtactcttactacctgtat
                            -35                  -10        +1                   
Note(s): Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.41. P-value: 1.791e-5
Evidence: [ICWHO]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal RcdA1 repressor yagKp6 293111 293121 3.5 atataatggcATTGTGTACTCttactacctg nd [BPP] [2]
Note(s): 1The curator assigned the possible central position of this binding site based on similarity to a consensus sequence (TTGTGTACA) identified by Shimada et al. in 2012 Shimada T,20121The curator assigned the possible central position of this binding site based on similarity to a consensus sequence (TTGTGTACA) identified by Shimada et al. in 2012 Shimada T,2012


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [3] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -13.2 292957 292995 gtatggcatcCCTGTACGGTCTGCTATAGACCGTAGGACCAAATACAGgtatatatta
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





RegulonDB