RegulonDB RegulonDB 10.8: Operon Form
   

yaaU operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yaaU
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yaaU
Gene(s): yaaU   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: yaaUp
+1: 45592
Sigma Factor: Sigma54 Sigmulon
Distance from start of the gene: 215
Sequence: cacattgttgtgaaggccgatgctgataaacaggcgctggagctgctggtgaaagcgtgcCccgcaggtctgtacaagaag
                                      -24         -12       +1                   
Note(s): This promoter was identified by microarray and ChIP assays with a mutant
σ54 strain and a σ54-overexpressing strain,
and by σ54-related promoter element identification Zhao K,2010
We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ54-dependent promoters, whose transcription start sites were determined experimentally, present a distance of 11 nucleotides between the transcription start site and the -12 box Barrios H,1999.
Evidence: [HIPP]
[IEP]
Reference(s): [1] Zhao K., et al., 2010





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