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Name: | yccR | ||||||||||
Gene(s): | sxy Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit | ||||||||||
Promoter | |||||||||||
Name: | sxyp | ||||||||||
+1: | 1021083 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 55 | ||||||||||
Sequence: |
gtgacgggaaaacataaattaatcttgccccttaagaataagttgcctattttcgtagttAacggatccgttaatgtgaat -35 -10 +1 |
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Evidence: |
[COMP-HINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [RS-EPT-CBR] |
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Reference(s): |
[1] Jaskolska M., et al., 2015 [2] Salgado H, et al., 2012 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | CRP-Sxy | activator | sxyp | 1020991 | 1021013 | -81.5 | tcaaccctatTTTCGGAAAGAGCCTCGCAAATTttgtcgttgg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [1], [3] |
Reference(s) |
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