RegulonDB RegulonDB 11.1: Operon Form

sxy operon and associated TUs in Escherichia coli K-12 genome

Name: sxy
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yccR
Gene(s): sxy   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit
Name: sxyp
+1: 1021083
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 55
Sequence: gtgacgggaaaacataaattaatcttgccccttaagaataagttgcctattttcgtagttAacggatccgttaatgtgaat
                         -35                    -10         +1                   
Evidence: [COMP-HINF]
Reference(s): [1] Jaskolska M., et al., 2015
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-Sxy activator sxyp 1020991 1021013 -81.5 tcaaccctatTTTCGGAAAGAGCCTCGCAAATTttgtcgttgg nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1], [3]