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Name: | bhsA |
Gene(s): | bhsA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IC] Inferred by curator |
Promoter | |
Name: | bhsAp9 |
+1: | 1169019 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 54 |
Sequence: |
attaatgattgttataaaaaatatcttgtatgtgatccagatcacatctatcatttagttAtcgatcgttaagtaattgct -35 -10 +1 |
Note(s): | Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.196. P-value: 4.725e-5 The bhsAp9 promoter is significantly affected by ectopic production of a nanoRNase during stationary-phase growth Vvedenskaya IO,2012 |
Evidence: |
[ICWHO] [TIM] |
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Vvedenskaya IO., et al., 2012 |
Name: | ycfR |
Gene(s): | bhsA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [AISDTU] Automated inference that a single-gene directon is a transcription unit |
Promoter | |
Name: | bhsAp |
+1: | 1169033 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 40 |
Sequence: |
taaaaaatatcttgtatgtgatccagatcacatctatcatttagttatcgatcgttaagtAattgcttgcgacgtcattca |
Evidence: | [HTIM] |
Reference(s): | [3] Raghavan R., et al., 2011 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cAMP | repressor | bhsAp | 1168986 | 1169008 | -36.5 | aaaatatcttGTATGTGATCCAGATCACATCTAtcatttagtt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3], [4] |
Note(s): |
1The exact position where ComR binds to the bhsA gene is not known. However, it has been suggested that ComR binds to a 60 bp region upstream of the bhsA gene, based on analysis of PCR fragments Mermod M,2012. Currently, it seems that bhsA is a unique gene of the nearly up- and downstream comR/bhsA region regulated by ComR Mermod M,2012. Induction by copper is the principal regulation mechanism of the bhsA gene Mermod M,2012. 2The exact position where ComR binds to the bhsA gene is not known. However, it has been suggested that ComR binds to a 60 bp region upstream of the bhsA gene, based on analysis of PCR fragments Mermod M,2012. Currently, it seems that bhsA is a unique gene of the nearly up- and downstream comR/bhsA region regulated by ComR Mermod M,2012. Induction by copper is the principal regulation mechanism of the bhsA gene Mermod M,2012. |
Reference(s) |
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