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Name: | relBE-hokD |
Gene(s): | hokD, relE, relB Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Bech FW., et al., 1985 |
Promoter | |
Name: | relBp |
+1: | 1645903 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 31 |
Sequence: |
cgactactttctgacttccttcgtgacttgccctaagcatgttgtagtgcgatacttgtaAtgacatttgtaattacaaga -35 -10 +1 |
Evidence: | [TIM] |
Reference(s): |
[1] Bech FW., et al., 1985 [2] Belliveau NM., et al., 2018 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | aaaaacaaaaACCCGCCGAAGCGGGTtaagtgcggg |
Reference(s): | [1] Bech FW., et al., 1985 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | RelB | repressor | relBp | 1645885 | 1645897 | 13.5 | tgtaatgacaTTTGTAATTACAAgaggtgtaag | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
proximal | RelB | repressor | relBp | 1645897 | 1645908 | 1.5 | agtgcgatacTTGTAATGACATttgtaattac | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [2], [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | RelB-RelE | repressor | relBp | 1645871 | 1645882 | 28.0 | aattacaagaGGTGTAAGACATgggtagcatt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
proximal | RelB-RelE | repressor | relBp | 1645885 | 1645897 | 13.5 | tgtaatgacaTTTGTAATTACAAgaggtgtaag | nd | [APIORCISFBSCS], [BPP] | [3] |
proximal | RelB-RelE | repressor | relBp | 1645897 | 1645908 | 1.5 | agtgcgatacTTGTAATGACATttgtaattac | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [2], [3] |
proximal | RelB-RelE | repressor | relBp | 1645911 | 1645922 | -13.5 | cctaagcatgTTGTAGTGCGATacttgtaatg | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
Gene(s): | relE, relB Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Gene(s): | hokD Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Translational |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -7.0 | 1645277 | 1645304 | aggtgacactTCTGCTTTGCGTTGACAGGAGAAGCAGgctatgaagc |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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