RegulonDB RegulonDB 10.7: Operon Form
   

hemA-prfA-prmC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: hemA-prfA-prmC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: hemA
Gene(s): hemA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Verkamp E., et al., 1989
Promoter
Name: hemAp2
+1: 1263583
Distance from start of the gene: 131
Sequence: acgttgcagttataacccttaatgctagcgttaccgtccgctatcgtctatgttcaagttGtcttaattgccagaatctaa
Evidence: [TIM]
Reference(s): [2] Choi P., et al., 1996
[1] Verkamp E., et al., 1989


Transcription unit          
Name: hemA-prfA-prmC
Gene(s): hemA, prfA, prmC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [3] Dahlgren A., et al., 2004
[1] Verkamp E., et al., 1989
Promoter
Name: hemAp1
+1: 1263676
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 38
Sequence: attactccaaaagggggcgctctcttttattgatcttacgcatcctgtatgatgcaagcaGactaaccctatcaacgttgg
                          -35                   -10         +1                   
Evidence: [TIM]
Reference(s): [2] Choi P., et al., 1996
[1] Verkamp E., et al., 1989
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd ArcA-Phosphorylated activator hemAp1 nd nd nd nd nd [GEA] [2], [4]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR repressor hemAp1 1263645 1263658 -24.5 ctctcttttaTTGATCTTACGCATcctgtatgat nd [BPP], [GEA] [2], [4], [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd IHF activator hemAp1 nd nd nd nd nd [GEA] [4]





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