RegulonDB RegulonDB 10.8: Operon Form
   

nrdR-ribDE-nusB-thiL-pgpA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: nrdR-ribDE-nusB-thiL-pgpA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: nrdR-ribDE-nusB-thiL-pgpA
Gene(s): nrdR, ribD, ribE, nusB, thiL, pgpA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[PAGTSBP] Products of adjacent genes in the same biological process
[PM] Polar mutation
Reference(s): [1] Torrents E., et al., 2007
Promoter
Name: nrdRp
+1: 432977
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 25
Sequence: ctttatctcaaaagcgttgcgcctttgttgtatcgtcagttcagggtaaaatagatttccGttaaccacctggtcaggacg
                         -35                   -10          +1                   
Evidence: [HIPP]
[RS-EPT-CBR]
Reference(s): [2] Salgado H, et al., 2012
[1] Torrents E., et al., 2007


Transcription unit       
Name: ribE-nusB-thiL-pgpA
Gene(s): ribE, nusB, thiL, pgpA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITC] Inferred through co-regulation
Reference(s): [3] Nonaka G., et al., 2006
Promoter
Name: ribEp
+1: 434504
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 143
Sequence: ccgcggattatgcacgctgccagggcttgagaaattagccgacgccccccaatttaaattCaaagagatacgtcatgtagg
                           -35                 -10          +1                   
Evidence: [AIPP]
[CV(RS-EPT-CBR)]
[CV(TIM)]
[RS-EPT-CBR]
[TIM]
Reference(s): [3] Nonaka G., et al., 2006
[2] Salgado H, et al., 2012





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