RegulonDB RegulonDB 10.8: Operon Form

symE operon and associated TUs in Escherichia coli K-12 genome

Name: symE
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: symE
Synonym(s): yjiW
Gene(s): symE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Fernandez De Henestrosa AR., et al., 2000
Name: symEp
+1: 4579917
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 77
Sequence: ttgcccattttattctatttttagctggactttccccatatttactgatgatatatacagGtatttagcgcggtgcggatg
                                -35                   -10   +1                   
Evidence: [HIPP]
Reference(s): [2] Kawano M., et al., 2007
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor symEp 4579916 4579935 -8.5 tccccatattTACTGATGATATATACAGGTatttagcgcg nd [AIBSCS], [BPP] [1], [3]

Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  symR antisense post-transcriptional regulation repressor      
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"