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Name: | ycjXF-tyrR |
Gene(s): | ycjX, ycjF, tyrR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ITC] Inferred through co-regulation |
Reference(s): | [1] Nonaka G., et al., 2006 |
Promoter | |
Name: | ycjXp |
+1: | 1384069 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 48 |
Sequence: |
tcgccggtcgatgacaacacgggcagttgataatcaatggcctggcccccacattcatatCcttacgaatgattttttttc -35 -10 +1 |
Evidence: |
[AIPP] [CV(TIM)] [IDA] [IEP] [TIM] |
Reference(s): |
[1] Nonaka G., et al., 2006 [2] Wade JT., et al., 2006 |
Name: | tyrR |
Synonym(s): | OP00096 |
Gene(s): | tyrR Genome Browser M3D Gene expression COLOMBOS |
Note(s): | In the regulatory region of the tyrR gene there are two TyrR boxes Cornish EC,1986. Pittard AJ,1991 where the protein appears to bind without a cofactor to autorepress the expression of the gene Camakaris H,1982. |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [4] Cornish EC., et al., 1986 |
Promoter | |
Name: | tyrRp |
+1: | 1386692 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 28 |
Sequence: |
tgtcaatgattgttgacagaaaccttcctgctatccaaatagtgtcatatcatcatattaAttgttcttttttcaggtgaa -35 -10 +1 |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [4] Cornish EC., et al., 1986 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | agtaagcgcgAATATGCCTGATGGTGCAACACCATCAGGCATATTaaattatgct |
Reference(s): | [4] Cornish EC., et al., 1986 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | TyrR | repressor | tyrRp | 1386588 | 1386605 | -95.5 | tatcgggtgcTGACCGGATATCTTTACGccgaagtgcc | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [5], [6] |
proximal | TyrR | repressor | tyrRp | 1386632 | 1386649 | -51.5 | tccgtctttgTGTCAATGATTGTTGACAgaaaccttcc | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [4], [5] |
Gene(s): | ycjX, ycjF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |