RegulonDB RegulonDB 10.9: Operon Form

mcbA operon and associated TUs in Escherichia coli K-12 genome

Name: mcbA
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: mcbA
Gene(s): mcbA   Genome Browser M3D Gene expression COLOMBOS
Note(s): The mcbA gene was significantly upregulated in bacterial cells associated with lettuce roots in a microarray analysis Hou Z,2012.
Evidence: [ICWHO] Inferred computationally without human oversight
Name: mcbAp5
+1: 842153
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 97
Sequence: aaaaatcagcattatgcatgtcattgatttgtcttattttgtaaaaatatatcgttcaaaAaataagcacatctctgtcaa
                        -35                       -10       +1                   
Note(s): Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.874. P-value: 3.501e-5
Evidence: [ICWHO]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd McbR repressor mcbAp5 nd nd nd nd nd [BPP], [GEA], [IGI] [2]