RegulonDB RegulonDB 10.8: Operon Form
   

bamD operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: bamD
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: bamD
Synonym(s): yfiO
Gene(s): bamD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: bamDp2
+1: 2735961
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 185
Sequence: ttttattcgcgaacgtgaataatccgggaacatttcggccaaagcctgatctaagcgttgAccgagttggttttcggacac
                            -35                   -10       +1                   
Note(s): bamDp2 presents two transcription initiation sites, with the following absolute positions: 2733982 and 2733983.
This promoter appears to be induced in two phases after σE induction. It is induced in a delayed way during the first 10 minutes following σE induction, decreased from 10 to 15 minutes, and induced from 15 to 20 minutes Lacoux C,2020.
Evidence: [AIPP]
[TIM]
Reference(s): [1] Rhodius VA., et al., 2005


Transcription unit       
Name: bamD
Synonym(s): yfiO
Gene(s): bamD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: bamDp
+1: 2736006
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 140
Sequence: ctgatctaagcgttgaccgagttggttttcggacaccgttgcagtgagctgtactcgttgTgccatatatactgcttcttc
                        -35                     -10         +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [2] Dartigalongue C., et al., 2001


Evidence    

 [AIPP] Automated inference of promoter position

 [TIM] Transcription initiation mapping

 [HIPP] Human inference of promoter position


Reference(s)    

 [1] Rhodius VA., Suh WC., Nonaka G., West J., Gross CA., 2005, Conserved and variable functions of the sigmaE stress response in related genomes., PLoS Biol 4(1):e2

 [2] Dartigalongue C., Missiakas D., Raina S., 2001, Characterization of the Escherichia coli sigma E regulon., J Biol Chem 276(24):20866-75

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