RegulonDB RegulonDB 10.7: Operon Form
   

yciZT operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yciZT
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yciT
Gene(s): yciT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IEP] Inferred from expression pattern
Reference(s): [1] Maciag A., et al., 2011
Promoter
Name: yciTp
+1: 1344510
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 164
Sequence: gatattgtgttagatatccttgtggcaggcgattaccactctgcgatccataatctcgagAtacttaaagcagaactcttg
                                                -10         +1                   
Evidence: [HTIM]
Reference(s): [1] Maciag A., et al., 2011


Transcription unit       
Name: yciZT
Synonym(s): deoT, yciT
Gene(s): yciT, yciZ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITC] Inferred through co-regulation
Reference(s): [1] Maciag A., et al., 2011
Promoter
Name: yciZp
+1: 1344638
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 29
Sequence: gataattagccgttgctgttaaacacttctcttttagcggcaatttttgcattattcattTtcccccttttgctataagga
                               -35              -10         +1                   
Evidence: [TIM]
Reference(s): [2] Elgrably-Weiss M., et al., 2006


Evidence    

 [HTIM] High-throughput transcription initiation mapping

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Maciag A., Peano C., Pietrelli A., Egli T., De Bellis G., Landini P., 2011, In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements., Nucleic Acids Res 39(13):5338-55

 [2] Elgrably-Weiss M., Schlosser-Silverman E., Rosenshine I., Altuvia S., 2006, DeoT, a DeoR-type transcriptional regulator of multiple target genes., FEMS Microbiol Lett 254(1):141-148

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