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Name: | ydhYVWXUT |
Gene(s): | ydhT, ydhU, ydhX, ydhW, ydhV, ydhY Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [LTED] Length of transcript experimentally determined [PAGTSBP] Products of adjacent genes in the same biological process |
Reference(s): | [1] Partridge JD., et al., 2008 |
Promoter | |
Name: | ydhYp |
+1: | 1754642 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 165 |
Sequence: |
tgtaattttaattgataacgatcaatgttaagggctcagaataatcacattattttttctCctaaccataaaggattagtt -35 -10 +1 |
Evidence: | [TIM] |
Reference(s): | [1] Partridge JD., et al., 2008 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FNR | activator | ydhYp | 1754678 | 1754691 | -42.5 | gtaattttaaTTGATAACGATCAAtgttaagggc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1], [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NarL-Phosphorylated | repressor | ydhYp | 1754620 | 1754635 | 15.0 | tctcctaaccATAAAGGATTAGTTTAtcggcgttaa | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1] |
proximal | NarL-Phosphorylated | repressor | ydhYp | 1754629 | 1754644 | 6.0 | attattttttCTCCTAACCATAAAGGattagtttat | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1] |
proximal | NarL-Phosphorylated | repressor | ydhYp | 1754650 | 1754665 | -16.0 | ttaagggctcAGAATAATCACATTATtttttctcct | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1] |
proximal | NarL-Phosphorylated4 | repressor | ydhYp | 1754676 | 1754691 | -42.0 | gtaattttaaTTGATAACGATCAATGttaagggctc | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NarP-Phosphorylated | repressor | ydhYp | 1754625 | 1754632 | 15.0 | cctaaccataAAGGATTAgtttatcggc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1] |
proximal | NarP-Phosphorylated | repressor | ydhYp | 1754634 | 1754641 | 6.0 | attttttctcCTAACCATaaaggattag | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [1] |
Note(s): |
4Although this site (-42 heptamer) had significant contribution in in vivo assays, no clear protection by NarL was detected in DNase footprint analyses. However, this suggests that there are other factors in vivo that lead to occupation of the -42 heptamer by NarL in the presence of nitrate Partridge JD,2008.2Although this site (-42 heptamer) had significant contribution in in vivo assays, no clear protection by NarL was detected in DNase footprint analyses. However, this suggests that there are other factors in vivo that lead to occupation of the -42 heptamer by NarL in the presence of nitrate Partridge JD,2008. |
Gene(s): | ydhT, ydhU, ydhX Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Gene(s): | ydhW, ydhV, ydhY Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Reference(s) |
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