![]() ![]() ![]() |
Name: | talA-tktB |
Gene(s): | talA, tktB Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The expression of the operon talA-tktB is increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 |
Evidence: | [ITC] Inferred through co-regulation [PAGTSBP] Products of adjacent genes in the same biological process |
Reference(s): | [1] Harinarayanan R., et al., 2008 |
Promoter | |
Name: | talAp2 |
+1: | 2578570 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 96 |
Sequence: |
aatgttttggtaataatcctataacactgatgttacctgcttaatccagcaataccatgcCtgtctgctatgcttttttga -35 -10 +1 |
Evidence: | [TIM] |
Reference(s): | [2] Lacour S., et al., 2004 |
Name: | talA-tktB |
Gene(s): | talA, tktB Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ITC] Inferred through co-regulation [PAGTSBP] Products of adjacent genes in the same biological process |
Reference(s): | [1] Harinarayanan R., et al., 2008 |
Promoter | |
Name: | talAp1 |
+1: | 2578588 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 78 |
Sequence: |
ctataacactgatgttacctgcttaatccagcaataccatgcctgtctgctatgctttttTgatgcgtttagcgaaatttc -35 -10 +1 |
Evidence: | [TIM] |
Reference(s): | [2] Lacour S., et al., 2004 |
Name: | talA |
Gene(s): | talA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IC] Inferred by curator |
Promoter | |
Name: | talAp |
+1: | 2578608 |
Distance from start of the gene: | 58 |
Sequence: |
gcttaatccagcaataccatgcctgtctgctatgcttttttgatgcgtttagcgaaatttCtcagaagtgtgaattaacgc |
Evidence: | [HTIM] |
Reference(s): | [3] Mendoza-Vargas A., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CreB-Phosphorylated | activator | talAp | 2578388 | 2578406 | -211.5 | ttggttgttcCTTTCACGTAACGTTCACAaataaagtgt | nd | [AIBSCS], [CV(GEA)], [GEA] | [4] |
Name: | tktB |
Gene(s): | tktB Genome Browser M3D Gene expression COLOMBOS |
Note(s): | tktB is positively regulated by ppGpp in RpoS-dependent and -independent modes Harinarayanan R,2008 The expression of tktB is increased by PhoB under acidic growth conditions Marzan LW,2013 |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [5] Iida A., et al., 1993 |
Promoter | |
Name: | tktBp |
+1: | 2579308 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 328 |
Sequence: |
gtggtggaagaagatccgggcgttaaatcggtgcgcaatatctacgactactataagcaaCaccactatgaaaccattgtg -35 -10 +1 |
Note(s): | Jung et al. in 2005 found that the tktB gene is positively regulated by RpoS in stationary phase and is mainly controlled at the transcription level Jung IL,2005 |
Evidence: | [HIPP] |
Reference(s): | [6] Jung IL., et al., 2005 |
Reference(s) |
![]() |
---|---|