RegulonDB RegulonDB 10.9: Operon Form
   

rlmE-ftsH operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rlmE-ftsH
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rlmE-ftsH
Synonym(s): rrmJ-hflB
Gene(s): ftsH, rlmE   Genome Browser M3D Gene expression COLOMBOS
Note(s): Based on ChIP-chip and consensus sequences (Virtual Footprint), a site of NsrR negatively controlling the ftsH gene has been identified Partridge JD,2009 The consensus sequence found for this gene is AAGATGCTGGAT, which lies in the intergenic region rlmE-ftsH.
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Herman C., et al., 1995
[2] Tomoyasu T., et al., 1993
Promoter
Name: rlmEp2
+1: 3327731
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 67
Sequence: atcgtattttttgcttacgttgggattgaaaacgggtcattctaccgccatctcccatatAtcaccaaataggcgcgtaaa
                          -35                 -10           +1                   
Note(s): This promoter shows an increase in transcription during heat shock
Evidence: [AIPP]
[HIPP]
[ICWHO]
[IDA]
[IEP]
[TIM]
Reference(s): [1] Herman C., et al., 1995
[3] Huerta AM., et al., 2003
[4] Nonaka G., et al., 2006
[5] Wade JT., et al., 2006
Terminator(s)
Type: rho-independent
Sequence: ttgataagaaAAAACCCCGGAGCACGCCCCGGGGTTTTcggtacaaat
Reference(s): [2] Tomoyasu T., et al., 1993


Transcription unit       
Name: rlmE-ftsH
Synonym(s): rrmJ-hflB
Gene(s): ftsH, rlmE   Genome Browser M3D Gene expression COLOMBOS
Note(s): Based on ChIP-chip and consensus sequences (Virtual Footprint), a site of NsrR negatively controlling the ftsH gene has been identified Partridge JD,2009 The consensus sequence found for this gene is AAGATGCTGGAT, which lies in the intergenic region rlmE-ftsH.
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Herman C., et al., 1995
[2] Tomoyasu T., et al., 1993
Promoter
Name: rlmEp1
+1: 3327760
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 96
Sequence: ggtgctgtttttgtttagtactcagattcatcgtattttttgcttacgttgggattgaaaAcgggtcattctaccgccatc
                     -35                     -10            +1                   
Note(s): The rrmJp1 promoter shows a decrease in transcription during heat shock. The poor match of this promoter with the σ70 consensus sequence suggests additional regulation.
Evidence: [HIPP]
[ICWHO]
[TIM]
Reference(s): [1] Herman C., et al., 1995
[3] Huerta AM., et al., 2003
Terminator(s)
Type: rho-independent
Sequence: ttgataagaaAAAACCCCGGAGCACGCCCCGGGGTTTTcggtacaaat
Reference(s): [2] Tomoyasu T., et al., 1993





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