RegulonDB RegulonDB 11.2: Operon Form
   

yjeV operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yjeV
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yjeV
Gene(s): yjeV   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Kitagawa R., et al., 1996
Promoter
Name: yjeVp
+1: 4392736
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 156
Sequence: aatatccacagcgacgcgatgcgttattgctggtttttgttgtctctgacaaactcttgtAaacagagttatccacagcct
                           -35                    -10       +1                   
Evidence: [COMP-AINF]
[COMP-HINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [2] Huerta AM., et al., 2003
[1] Kitagawa R., et al., 1996
TF binding sites (TFBSs)
[DnaA,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal DnaA-ATP repressor yjeVp 4392677 4392685 -55.0 tctcaataaaATATCCACAgcgacgcgat nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [1]
proximal DnaA-ATP repressor yjeVp 4392744 4392752 13.0 gtaaacagagTTATCCACAgcctcaggct nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-DAP-SEQ], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF] Inferred by a human based on computational evidence

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] Binding of purified proteins

 [EXP-DAP-SEQ] high throughput DNA Affinity Purification (DAP) Sequencing


Reference(s)    

 [1] Kitagawa R., Mitsuki H., Okazaki T., Ogawa T., 1996, A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome., Mol Microbiol 19(5):1137-47

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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