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Name: | yqjA-mzrA | ||||||||||
Synonym(s): | yqjAB | ||||||||||
Gene(s): | yqjA, mzrA Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | Under NlpE outer membrane lipoprotein overexpression, the transcription of the mzrA gene is increased by CpxR Raivio TL,2013 | ||||||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight | ||||||||||
Promoter | |||||||||||
Name: | yqjAp1 | ||||||||||
+1: | 3247548 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 225 | ||||||||||
Sequence: |
taaagtgtcagcctgtgtaaatcctctcgccaccctcccctgcattcagcaaaatcagacTccacggacatgtaattttga -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[1] Huerta AM., et al., 2003 [2] Yamamoto K., et al., 2006 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | CpxR-phosphorylated | activator | yqjAp1 | 3247500 | 3247501 | -47.0 | agtgtcagccTgtgtaaatcc | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [2] |
Name: | yqjA-mzrA |
Gene(s): | yqjA, mzrA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [COMP-AINF] Inferred computationally without human oversight |
Promoter | |
Name: | yqjAp2 |
+1: | 3247643 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 130 |
Sequence: |
gacctttgttacaattagattcaatttgaatttatgtttttgaatgctttcttatctcacGatttaacagggaatagttca -35 -10 +1 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [COMP-HINF-SIMILAR-TO-CONSENSUS] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
Reference(s): |
[3] Dartigalongue C., et al., 2001 [1] Huerta AM., et al., 2003 |
Reference(s) |
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