RegulonDB RegulonDB 10.6.3: Operon Form
   

higBA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: higBA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Gene(s): higA, higB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IBAA] Inferred from Biological aspect from Ancestor
[ICWHO] Inferred computationally without human oversight
[LTED] Length of transcript experimentally determined
[PAGTSBP] Products of adjacent genes in the same biological process
Reference(s): [1] Christensen-Dalsgaard M., et al., 2010
[2] Yang J., et al., 2016
Promoter
Name: higBp
+1: 3234480
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 25
Sequence: ttccgtcacacagataaattcatccgttgccaatctggcaacggatgttatcatattgccAatttgtcaacggacgtgatg
                           -10                   -35        +1                   
Evidence: [RS-EPT-CBR]
[TIM]
Reference(s): [1] Christensen-Dalsgaard M., et al., 2010
[3] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal HigB-HigA repressor higBp 3234467 3234486 5.0 atgttatcatATTGCCAATTTGTCAACGGAcgtgatgaag nd [BPP], [IHBCE] [2]
proximal HigB-HigA repressor higBp 3234494 3234521 -27.0 acagataaatTCATCCGTTGCCAATCTGGCAACGGATGttatcatatt nd [BPP], [IHBCE] [2]
proximal HigA repressor higBp 3234494 3234521 -27.0 acagataaatTCATCCGTTGCCAATCTGGCAACGGATGttatcatatt nd [BPP], [IHBCE] [2]





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