RegulonDB RegulonDB 10.8: Operon Form
   

azuC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: azuC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: azuC
Gene(s): azuC   Genome Browser M3D Gene expression COLOMBOS
Note(s): azuC gene expression is induced in acid medium at both transcriptional and posttranscriptional levels Hemm MR,2010
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Hemm MR., et al., 2010
Promoter
Name: azuCp
+1: 1988001
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 42
Sequence: tttatgtgatttgtatcacataaagattgatttttgtgatggttgtcatattataagcgcAaagacaataacacctgtata
                           -35                   -10        +1                   
Evidence: [TIM]
Reference(s): [1] Hemm MR., et al., 2010
TF binding sites (TFBSs)
[CRP,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP repressor azuCp 1988009 1988030 -18.5 aaagattgatTTTTGTGATGGTTGTCATATTAtaagcgcaaa nd [APIORCISFBSCS], [CV(GEA)], [GEA] [1]
proximal CRP-cAMP repressor azuCp 1988039 1988060 -48.5 aaaggggtatTTATGTGATTTGTATCACATAAagattgattt nd [APIORCISFBSCS], [CV(GEA)], [GEA] [1]


Evidence    

 [TIM] Transcription initiation mapping

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [CV(GEA)] cross validation(GEA)

 [GEA] Gene expression analysis


Reference(s)    

 [1] Hemm MR., Paul BJ., Miranda-Rios J., Zhang A., Soltanzad N., Storz G., 2010, Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies., J Bacteriol 192(1):46-58

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