Name: |
glcC |
Gene(s): |
glcC
Genome Browser
M3D Gene expression
COLOMBOS
|
Evidence: |
[LTED] Length of transcript experimentally determined |
Reference(s): |
[1] Pellicer MT., et al., 1996
|
Promoter |
|
Name: |
glcCp |
+1: |
3128206 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
66
|
Sequence: |
ccagctctgtgaccttgtcttggttaactcaatgttaaattgatgtaacataatcacttaCgtgatgtgcgtgttttgcga -35 -10 +1
|
Evidence: |
[HIPP] [ICWHO] [IHBCE] [TIM]
|
Reference(s): |
[2] Huerta AM., et al., 2003 [3] Pellicer MT., et al., 1999
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
Cra
|
repressor |
glcCp |
3128193
|
3128210
|
-4.5
|
aattgatgtaACATAATCACTTACGTGAtgtgcgtgtt |
nd
|
[GEA], [AIBSCS]
|
[6]
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
Fis
|
repressor |
glcCp |
3128079
|
3128093
|
-120.0
|
ctgcttctgtGAACAGTTATTAAGCgggcttttcg |
nd
|
[GEA], [AIBSCS]
|
[4]
|
proximal |
Fis
|
repressor |
glcCp |
3128109
|
3128123
|
-90.0
|
tttcgttttcGTCTATCTCTTTAGCtaccggtcag |
nd
|
[GEA], [AIBSCS]
|
[4]
|
proximal |
Fis
|
repressor |
glcCp |
3128133
|
3128147
|
-66.0
|
ctaccggtcaGACCATTTTTTTTCCagctctgtga |
nd
|
[GEA], [AIBSCS]
|
[4]
|
remote |
Fis
|
repressor |
glcCp |
3128270
|
3128284
|
72.0
|
cgaggtccggGAATGAAAGATGAACgtcgccctat |
nd
|
[GEA], [AIBSCS]
|
[4]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
Fis |
repressor |
glcCp |
3128079
|
3128093
|
-120.0
|
ctgcttctgtGAACAGTTATTAAGCgggcttttcg
|
[GEA]
|
[4]
|
Fis |
repressor |
glcCp |
3128109
|
3128123
|
-90.0
|
tttcgttttcGTCTATCTCTTTAGCtaccggtcag
|
[GEA]
|
[4]
|
Fis |
repressor |
glcCp |
3128133
|
3128147
|
-66.0
|
ctaccggtcaGACCATTTTTTTTCCagctctgtga
|
[GEA]
|
[4]
|
CRP-cyclic-AMP |
activator |
glcCp |
3128177
|
3128198
|
-18.5
|
ggttaactcaATGTTAAATTGATGTAACATAAtcacttacgt
|
[GEA]
|
[5]
|
Cra |
repressor |
glcCp |
3128193
|
3128210
|
-4.5
|
aattgatgtaACATAATCACTTACGTGAtgtgcgtgtt
|
[GEA]
|
[6]
|
GlcC-glycolate |
repressor |
glcCp |
3128245
|
3128259
|
47.0
|
cagaaaaattGGTCCTACCTGTGCAcgaggtccgg
|
[GEA]
|
[3]
|
Fis |
repressor |
glcCp |
3128270
|
3128284
|
72.0
|
cgaggtccggGAATGAAAGATGAACgtcgccctat
|
[GEA]
|
[4]
|