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Name: | alaA | ||||||||||
Gene(s): | alaA Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | Alanine and leucine modestly repressed the avtA and alaA genes via Lrp Kim SH,2010 | ||||||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight | ||||||||||
Promoter | |||||||||||
Name: | alaAp9 | ||||||||||
+1: | 2407408 | ||||||||||
Sigma Factor: | Sigma32 Sigmulon | ||||||||||
Distance from start of the gene: | 153 | ||||||||||
Sequence: |
aagaatcagaacaattcactatataacattgcatgtaaagcatatacacctcattattttGtcattattaagttattaaca -35 -10 +1 |
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Evidence: | [COMP-AINF] | ||||||||||
Reference(s): | [1] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | Lrp-L-leucine | repressor | alaAp9 | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [2] |
Name: | yfbR |
Gene(s): | yfbR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [COMP-AINF] Inferred computationally without human oversight |
Promoter | |
Name: | yfbRp3 |
+1: | 2408831 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 31 |
Sequence: |
agctgtaatcttaatttcactgccggagattgcatccggcagcgttatcccgccacaatgAcctgatgatgtcatcatacg -35 -10 +1 |
Evidence: | [COMP-AINF] |
Reference(s): | [1] Huerta AM., et al., 2003 |
Name: | alaA-yfbR |
Gene(s): | alaA, yfbR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation |
Reference(s): | [2] Kim SH., et al., 2010 |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Translational |
Strand: | forward |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -6.0 | 2407514 | 2407531 | tctaagctgaCTTCCACGGCAGGGAGTggcgataaca | |
terminator | -10.4 | 2408829 | 2408859 | ccgccacaatGACCTGATGATGTCATCATACGTAAGGTCActatgaaaca |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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