RegulonDB RegulonDB 10.8: Operon Form
   

pgpC-tadA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: pgpC-tadA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: pgpC-tadA
Gene(s): tadA, pgpC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: pgpCp
+1: 2698638
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 88
Sequence: tttatattccattgccgctaattgccatgaattaaaaattccagttagccatgatgcggtCgattgttgccggaaaagtga
                           -35                 -10          +1                   
Evidence: [AIPP]
Reference(s): [1] Mendoza-Vargas A., et al., 2009
TF binding sites (TFBSs)
[NsrR,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote NsrR repressor pgpCp 2698503 2698514 131.0 gttttttgacTTAGATGGAACAttgcatcagc nd [APIORCISFBSCS], [CV(GEA/ROMA)], [GEA] [2]


Evidence    

 [AIPP] Automated inference of promoter position

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [CV(GEA/ROMA)] cross validation(GEA/ROMA)

 [GEA] Gene expression analysis


Reference(s)    

 [1] Mendoza-Vargas A., Olvera L., Olvera M., Grande R., Vega-Alvarado L., Taboada B., Jimenez-Jacinto V., Salgado H., Juarez K., Contreras-Moreira B., Huerta AM., Collado-Vides J., Morett E., 2009, Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli., PLoS One 4(10):e7526

 [2] Partridge JD., Bodenmiller DM., Humphrys MS., Spiro S., 2009, NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility., Mol Microbiol 73(4):680-94

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