RegulonDB RegulonDB 10.8: Operon Form
   

comR operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: comR
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ycfQ
Gene(s): comR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: comRp
+1: 1168844
Distance from start of the gene: 12
Sequence: tctggactggtgaacggaggtgattatttttataataacctttcattcacagtcaccaggTacaacggcatcatggcaact
Evidence: [HTIM]
Reference(s): [1] Raghavan R., et al., 2011
TF binding sites (TFBSs)
[CRP,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CRP-cAMP repressor comRp 1168986 1169008 -152.5 aactaaatgaTAGATGTGATCTGGATCACATACaagatatttt nd [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] [1], [2]


Evidence    

 [HTIM] High-throughput transcription initiation mapping

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [BPP] Binding of purified proteins

 [CV(GEA)] cross validation(GEA)

 [GEA] Gene expression analysis


Reference(s)    

 [1] Raghavan R., Sage A., Ochman H., 2011, Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli., J Bacteriol 193(11):2871-4

 [2] Zhang XS., Garcia-Contreras R., Wood TK., 2007, YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity., J Bacteriol 189(8):3051-62

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