RegulonDB RegulonDB 11.0: Operon Form
   

yadV-htrE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yadV-htrE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yadV-htrE
Synonym(s): ecpD, htrE
Gene(s): htrE, yadV   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PM] Polar mutation
Reference(s): [1] Raina S., et al., 1993
Promoter
Name: yadVp3
+1: 156214
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 13
Sequence: atgaatatacagggaataataatttctattttatattattccctgttttaattaactctaTcagggatggtttatgttttt
                       -35                       -10        +1                   
Evidence: [HIPP]
[ICWHO]
[IHBCE]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Raina S., et al., 1993
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd IHF activator yadVp3 nd nd nd nd nd [GEA], [BPP] [1]


Transcription unit          
Name: yadV-htrE
Synonym(s): ecpD, htrE
Gene(s): htrE, yadV   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PM] Polar mutation
Reference(s): [1] Raina S., et al., 1993
Promoter
Name: yadVp2
+1: 156224
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 23
Sequence: aattgattgaatgaatatacagggaataataatttctattttatattattccctgttttaAttaactctatcagggatggt
                      -35                 -10               +1                   
Evidence: [HIPP]
[ICWHO]
[IHBCE]
[IMP]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Raina S., et al., 1993
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd IHF activator yadVp2 nd nd nd nd nd [GEA], [BPP] [1]


Transcription unit          
Name: yadV-htrE
Synonym(s): ecpD, htrE
Gene(s): htrE, yadV   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PM] Polar mutation
Reference(s): [1] Raina S., et al., 1993
Promoter
Name: yadVp1
+1: 156235
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 34
Sequence: ttcaccagttaaattgattgaatgaatatacagggaataataatttctattttatattatTccctgttttaattaactcta
                            -35                        -10  +1                   
Evidence: [HIPP]
[ICWHO]
[IHBCE]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Raina S., et al., 1993
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd IHF activator yadVp1 nd nd nd nd nd [GEA], [BPP] [1]





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