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Name: | yadV-htrE | ||||||||||
Synonym(s): | ecpD, htrE | ||||||||||
Gene(s): | htrE, yadV Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IMP-POLAR-MUTATION] Polar mutation | ||||||||||
Reference(s): | [1] Raina S., et al., 1993 | ||||||||||
Promoter | |||||||||||
Name: | yadVp3 | ||||||||||
+1: | 156214 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 13 | ||||||||||
Sequence: |
atgaatatacagggaataataatttctattttatattattccctgttttaattaactctaTcagggatggtttatgttttt -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Raina S., et al., 1993 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | IHF | activator | yadVp3 | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [1] |
Name: | yadV-htrE | ||||||||||
Synonym(s): | ecpD, htrE | ||||||||||
Gene(s): | htrE, yadV Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IMP-POLAR-MUTATION] Polar mutation | ||||||||||
Reference(s): | [1] Raina S., et al., 1993 | ||||||||||
Promoter | |||||||||||
Name: | yadVp2 | ||||||||||
+1: | 156224 | ||||||||||
Sigma Factor: | Sigma38 Sigmulon | ||||||||||
Distance from start of the gene: | 23 | ||||||||||
Sequence: |
aattgattgaatgaatatacagggaataataatttctattttatattattccctgttttaAttaactctatcagggatggt -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IMP] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Raina S., et al., 1993 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | IHF | activator | yadVp2 | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [1] |
Name: | yadV-htrE | ||||||||||
Synonym(s): | ecpD, htrE | ||||||||||
Gene(s): | htrE, yadV Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IMP-POLAR-MUTATION] Polar mutation | ||||||||||
Reference(s): | [1] Raina S., et al., 1993 | ||||||||||
Promoter | |||||||||||
Name: | yadVp1 | ||||||||||
+1: | 156235 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 34 | ||||||||||
Sequence: |
ttcaccagttaaattgattgaatgaatatacagggaataataatttctattttatattatTccctgttttaattaactcta -35 +10 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
||||||||||
Reference(s): |
[2] Huerta AM., et al., 2003 [1] Raina S., et al., 1993 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | IHF | activator | yadVp1 | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [1] |
Reference(s) |
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