RegulonDB RegulonDB 10.9: Operon Form

psd-mscM operon and associated TUs in Escherichia coli K-12 genome

Transcription unit          
Name: psd-mscM
Gene(s): mscM, psd   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: psdp
+1: 4390638
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 278
Sequence: gtgagttcggcctctggcacctggagccggaacaaatcactcagggctttgtcgaattccAtgactatttaggtctgtgta
                              -35                   -10     +1                   
Note(s): This promoter appears to be induced during the first 15 minutes following σE induction; after 15 minutes it is drastically decreased Lacoux C,2020
Evidence: [AIPP]
Reference(s): [1] Huerta AM., et al., 2003
[2] Rezuchova B., et al., 2003
[3] Rhodius VA., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CpxR-phosphorylated1 repressor psdp 4390481 4390495 151.0 gcatggcgcaGGTAAAAACGCGTAAAaacttttctg nd [ICA] [4]
Note(s): 1This is an unusual site because it is 151 bp downstream of the psdp promoter.1This is an unusual site because it is 151 bp downstream of the psdp promoter.