RegulonDB RegulonDB 10.7: Operon Form
   

ecpA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ecpA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Gene(s): ecpA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: matBp5
+1: 310797
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 126
Sequence: gcaacctaaatcgattgccagaattgaaaattgtagtgtgaagacagtgtatacccatcgGcgtaatgctgaggccaagct
                        -35                       -10       +1                   
Note(s): Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.104. P-value: 1.201e-5
Evidence: [ICWHO]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd MatA1 activator matBp5 nd nd nd nd nd [BPP] [2]
Note(s): 1MatA-matBp5 regulatory interaction was identified in Escherichia coli strain IHE 3034 Lehti TA,2012
MatA binds weakly to matBp Lehti TA,20121MatA-matBp5 regulatory interaction was identified in Escherichia coli strain IHE 3034 Lehti TA,2012
MatA binds weakly to matBp Lehti TA,2012





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