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Name: | ycjY |
Gene(s): | ycjY Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Promoter | |
Name: | ycjYp6 |
+1: | 1392072 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 219 |
Sequence: |
atcccaatcgttcttctatacgacgcactatctggcttaaagctgactgcgccatgctcaGgcgggctgctgcacgagtga |
Note(s): | Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 5.045. P-value: 9.351e-6 |
Evidence: | [ICWHO] |
Reference(s): | [1] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | PgrR | repressor | ycjYp6 | 1391953 | 1391967 | 113.5 | gcaatctattAATCATTTAAATGATaggtctaatc | nd | [BPP], [CV(GEA)], [CV(GEA)], [GEA], [IGI] | [2], [3] |
Name: | ycjY-ymjDC-mpaA |
Gene(s): | mpaA, ymjC, ymjD, ycjY Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The ycjY-ymjD-ymjC-mpaA operon is derepressed under nutrient starvation for self-generation of amino acids, but it is repressed under high osmotic conditions for maintenance of the rigidity of the peptidoglycan (PG) sacculus, which provides mechanical strength to resist osmotic challenges Shimada T,2013 |
Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process |
Reference(s): | [3] Shimada T., et al., 2013 |
Promoter | |
Name: | ycjYp6 |
+1: | 1392072 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 219 |
Sequence: |
atcccaatcgttcttctatacgacgcactatctggcttaaagctgactgcgccatgctcaGgcgggctgctgcacgagtga |
Note(s): | Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 5.045. P-value: 9.351e-6 |
Evidence: | [ICWHO] |
Reference(s): | [1] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | PgrR | repressor | ycjYp6 | 1391953 | 1391967 | 113.5 | gcaatctattAATCATTTAAATGATaggtctaatc | nd | [BPP], [CV(GEA)], [CV(GEA)], [GEA], [IGI] | [2], [3] |
Gene(s): | mpaA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IC] Inferred by curator [LTED] Length of transcript experimentally determined |
Reference(s): | [3] Shimada T., et al., 2013 |
Gene(s): | mpaA, ymjC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Gene(s): | mpaA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IC] Inferred by curator [LTED] Length of transcript experimentally determined |
Reference(s): | [3] Shimada T., et al., 2013 |
Reference(s) |
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