RegulonDB RegulonDB 11.1: Operon Form
   

appCBXA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: appCBXA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: appCBA-yccB
Synonym(s): OP00137, appCBA, cyx-appA, cyxAB-appA
Gene(s): appC, appB, appX, appA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IEP-COREGULATION] Inferred through co-regulation
[EXP-IMP-POLAR-MUTATION] Polar mutation
Reference(s): [1] Atlung T., et al., 1994
[2] Dassa J., et al., 1991
Promoter
Name: appCp
+1: 1037710
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 30
Sequence: ggcgaatacctctggtcgtagagtttcaggataaagagggagatctaccattatcgggttAtttttctctcttcgcctaca
                        -35                   -10           +1                   
Evidence: [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
Reference(s): [1] Atlung T., et al., 1994
[3] Atlung T., et al., 1997
[2] Dassa J., et al., 1991
[4] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd AppY activator appCp nd nd nd nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W nd
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd ArcA-phosphorylated activator appCp nd nd nd nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [6]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal YdeO activator appCp 1037672 1037694 -27.5 tggtcgtagaGTTTCAGGATAAAGAGGGAGATCtaccattatc nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [5]


Transcription unit          
Name: appCBA-yccB
Synonym(s): OP00137, appCBA, cyx-appA, cyxAB-appA
Gene(s): appC, appB, appX, appA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IEP-COREGULATION] Inferred through co-regulation
[EXP-IMP-POLAR-MUTATION] Polar mutation
Reference(s): [1] Atlung T., et al., 1994
[2] Dassa J., et al., 1991
Promoter
Name: appCp2
+1: 1037710
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 30
Sequence: ggcgaatacctctggtcgtagagtttcaggataaagagggagatctaccattatcgggttAtttttctctcttcgcctaca
                        -35              -10                +1                   
Evidence: [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
Reference(s): [1] Atlung T., et al., 1994
[3] Atlung T., et al., 1997
[2] Dassa J., et al., 1991
[4] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd AppY activator appCp2 nd nd nd nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W nd
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd ArcA-phosphorylated activator appCp2 nd nd nd nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [6]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal YdeO activator appCp2 1037672 1037694 -27.5 tggtcgtagaGTTTCAGGATAAAGAGGGAGATCtaccattatc nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [5]


Transcription unit       
Name: appA
Gene(s): appA   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Atlung T., et al., 1994
Promoter
Name: appAp
+1: 1040599
Distance from start of the gene: 18
Sequence:
Evidence: [COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [2] Dassa J., et al., 1991





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