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Name: | nanCMS | |||||||||
Gene(s): | nanS, nanM, nanC Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [ITCR] Inferred through co-regulation [PAGTSBP] Products of adjacent genes in the same biological process |
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Reference(s): | [1] Kalivoda KA., et al., 2013 | |||||||||
Promoter | ||||||||||
Name: | nanCp | |||||||||
+1: | 4539928 | |||||||||
Distance from start of the gene: | 427 | |||||||||
Sequence: |
aattgcaaatctggttttgttgtatggattgcgtgatttttgatctggtataacaggtatAaaggtgcaccaagatagtca |
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Evidence: | [TIM] | |||||||||
Reference(s): | [2] Condemine G., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | nanCp | 4539979 | 4540000 | -61.5 | gatcgacataTTTTGTGACACGAATTGCAAATctggttttgt | nd | [GEA], [AIBSCS], [BPP] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NagC | repressor | nanCp | 4539982 | 4540004 | -65.0 | aaaagatcgaCATATTTTGTGACACGAATTGCAaatctggttt | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | [2] |
remote | NagC | repressor | nanCp | 4540194 | 4540216 | -277.0 | aaccaggaaaCATATTTCATGATGAGAATTATGctcagcctga | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | nd |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NanR | repressor | nanCp | 4539922 | 4539923 | 6.5 | nd | nd | [GEA], [APIORCISFBSCS], [BPP], [GS], [SM] | [1], [2], [3], [4] |
proximal | NanR | repressor | nanCp | 4539930 | 4539931 | -2.5 | nd | nd | [GEA], [APIORCISFBSCS], [BPP], [GS], [SM] | [1], [2], [3], [4] |
proximal | NanR | repressor | nanCp | 4539939 | 4539940 | -11.5 | nd | nd | [GEA], [APIORCISFBSCS], [BPP], [GS], [SM] | [1], [2], [3], [4] |
Name: | nanCM | |||||||||
Gene(s): | nanM, nanC Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [ICWHO] Inferred computationally without human oversight | |||||||||
Promoter | ||||||||||
Name: | nanCp | |||||||||
+1: | 4539928 | |||||||||
Distance from start of the gene: | 427 | |||||||||
Sequence: |
aattgcaaatctggttttgttgtatggattgcgtgatttttgatctggtataacaggtatAaaggtgcaccaagatagtca |
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Evidence: | [TIM] | |||||||||
Reference(s): | [2] Condemine G., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | nanCp | 4539979 | 4540000 | -61.5 | gatcgacataTTTTGTGACACGAATTGCAAATctggttttgt | nd | [GEA], [AIBSCS], [BPP] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NagC | repressor | nanCp | 4539982 | 4540004 | -65.0 | aaaagatcgaCATATTTTGTGACACGAATTGCAaatctggttt | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | [2] |
remote | NagC | repressor | nanCp | 4540194 | 4540216 | -277.0 | aaccaggaaaCATATTTCATGATGAGAATTATGctcagcctga | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | nd |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NanR | repressor | nanCp | 4539922 | 4539923 | 6.5 | nd | nd | [GEA], [APIORCISFBSCS], [BPP], [GS], [SM] | [1], [2], [3], [4] |
proximal | NanR | repressor | nanCp | 4539930 | 4539931 | -2.5 | nd | nd | [GEA], [APIORCISFBSCS], [BPP], [GS], [SM] | [1], [2], [3], [4] |
proximal | NanR | repressor | nanCp | 4539939 | 4539940 | -11.5 | nd | nd | [GEA], [APIORCISFBSCS], [BPP], [GS], [SM] | [1], [2], [3], [4] |
Name: | yjhA |
Gene(s): | nanC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IHBCE] Inferred by a human based on computational evidence |
Name: | nanS |
Gene(s): | nanS Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Reference(s) |
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