RegulonDB RegulonDB 10.7: Operon Form
   

lapAB-pyrF-yciH operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: lapAB-pyrF-yciH
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: lapAB
Gene(s): lapA, lapB   Genome Browser M3D Gene expression COLOMBOS
Note(s): The lapAB operon is subject to heat shock |CITS:[24722986]|.
Evidence: [ICWHO] Inferred computationally without human oversight
[ITC] Inferred through co-regulation
[PAGTSBP] Products of adjacent genes in the same biological process
Reference(s): [1] Klein G., et al., 2014
Promoter
Name: lapAp1
+1: 1340135
Sigma Factor: Sigma32, Sigma70
Distance from start of the gene: 108
Sequence: aacgagaacaagaaagttaacgctggttgattttccgaatttagcccttaaatcatcaacAatgcgtgtggatgccatttc
                           -35                     -10      +1                   
Evidence: [AIPP]
[IDA]
[IEP]
[TIM]
Reference(s): [1] Klein G., et al., 2014
[2] Nonaka G., et al., 2006
[3] Wade JT., et al., 2006


Transcription unit       
Name: yciSM-pyrF-yciH
Gene(s): lapA, lapB, pyrF, yciH   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITC] Inferred through co-regulation
Reference(s): [2] Nonaka G., et al., 2006
Promoter
Name: lapAp1
+1: 1340135
Sigma Factor: Sigma32, Sigma70
Distance from start of the gene: 108
Sequence: aacgagaacaagaaagttaacgctggttgattttccgaatttagcccttaaatcatcaacAatgcgtgtggatgccatttc
                           -35                     -10      +1                   
Evidence: [AIPP]
[IDA]
[IEP]
[TIM]
Reference(s): [1] Klein G., et al., 2014
[2] Nonaka G., et al., 2006
[3] Wade JT., et al., 2006


Transcription unit       
Name: lapAB
Gene(s): lapA, lapB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITC] Inferred through co-regulation
[PAGTSBP] Products of adjacent genes in the same biological process
Reference(s): [1] Klein G., et al., 2014
Promoter
Name: lapAp2
+1: 1340186
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 57
Sequence: atcatcaacaatgcgtgtggatgccatttcgcagacggcgcgaaaatggtactttaaaggGctattgcggtaagttgacca
                                                  -10       +1                   
Evidence: [TIM]
Reference(s): [1] Klein G., et al., 2014


Transcription unit       
Gene(s): pyrF, yciH   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: pyrFp
+1: 1341870
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 51
Sequence: gcctgccaggggagaaatcgcaactgttaattttttatttccacgggtagaatgctcgccGtttacctgtttcgcgccact
                           -35                  -10         +1                   
Evidence: [RS-EPT-CBR]
[TIM] ; Method: Primer Extension
[TIM]
Reference(s): [4] Salgado H, et al., 2012
[5] Turnbough CL., et al., 1987





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