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Name: | bamA-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE |
Synonym(s): | ecfK-skp-lpxD-fabZ-lpxAB-rnhB-dnaE, yaeT-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE |
Gene(s): | bamA, skp, lpxD, fabZ, lpxA, lpxB, rnhB, dnaE Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ITC] Inferred through co-regulation |
Reference(s): | [1] Rhodius VA., et al., 2005 |
Promoter | |
Name: | bamAp2 |
+1: | 197026 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 902 |
Sequence: |
gcggaagcacaaattgcaccaggtacggaactaaaagccgtagatggtatcgaaacgcctGattgggatgccgtgcgtttg -35 -10 +1 |
Note(s): | This promoter appears to be induced in two phases after σE induction. It is induced during the first 5 minutes following σE induction, decreased from 5 to 10 minutes, induced from 10 to 15 minutes, and decreased from 15 to 20 minutes Lacoux C,2020. |
Evidence: |
[AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
Reference(s): |
[1] Rhodius VA., et al., 2005 [2] Salgado H, et al., 2012 |
Name: | bamA |
Synonym(s): | ecfK, yaeT |
Gene(s): | bamA Genome Browser M3D Gene expression COLOMBOS |
Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for bamA . This structure could regulate the expression of the gene, as observed for hemL gene expression 31964733. |
Promoter | |
Name: | bamAp |
+1: | 197821 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 107 |
Sequence: |
ctgctgttccttgcgatcgaaaagatcaagggcggaccggtatccgagcgggttcaagacTtttgttatcgcattggctcg -35 -10 +1 |
Note(s): | It was suggested, from high-throughput screening of maps of transcriptional start sites (TSSs), that the TSS (197821) assigned for this promoter is an RNA processing site Lacoux C,2020. |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [3] Dartigalongue C., et al., 2001 |
Name: | hlpA-lpxD-fabZ-lpxA |
Gene(s): | skp, lpxD, fabZ, lpxA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [3] Dartigalongue C., et al., 2001 |
Promoter | |
Name: | hlpAp |
+1: | 200455 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 27 |
Sequence: |
cgatgactttaggcgatcaatataagatcgccgggccacgcaaagaactgcaccctccggTgcaaatgggatggtaaggag -35 -10 +1 |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [3] Dartigalongue C., et al., 2001 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CpxR-Phosphorylated | activator | hlpAp | 200347 | 200361 | -101.0 | tttaacatcgGTAAAACCTGGTAAGtgttctccac | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [3] |
Name: | lpxD |
Gene(s): | lpxD Genome Browser M3D Gene expression COLOMBOS |
Promoter | |
Name: | lpxDp |
+1: | 200960 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 11 |
Sequence: |
acgccgttgcttacaacagcagcgatgtaaaagacatcactgccgacgtactgaaacaggTtaaataagtaatgccttcaa -35 -10 +1 |
Note(s): | It was suggested, from high-throughput screening of maps of transcriptional start sites (TSSs), that the TSS (200960) assigned for this promoter is an RNA processing site and a new TSS was mapped (200962) for this promoter Lacoux C,2020. |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [3] Dartigalongue C., et al., 2001 |
Reference(s) |
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