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| Operon |  |
|---|---|
| Name: | bamA-skp-lpxD-fabZ-lpxAB-rnhB-dnaE |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | bamA-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE |
| Synonym(s): | ecfK-skp-lpxD-fabZ-lpxAB-rnhB-dnaE, yaeT-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE |
| Gene(s): | bamA, skp, lpxD, fabZ, lpxA, lpxB, rnhB, dnaE Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [ITCR] Inferred through co-regulation |
| Reference(s): | [1] Rhodius VA., et al., 2005 |
| Promoter | |
| Name: | bamAp2 |
| +1: | 197026 |
| Sigma Factor: | Sigma24 Sigmulon |
| Distance from start of the gene: | 902 |
| Sequence: |
gcggaagcacaaattgcaccaggtacggaactaaaagccgtagatggtatcgaaacgcctGattgggatgccgtgcgtttg -35 -10 +1 |
| Note(s): | This promoter appears to be induced in two phases after σE induction. It is induced during the first 5 minutes following σE induction, decreased from 5 to 10 minutes, induced from 10 to 15 minutes, and decreased from 15 to 20 minutes Lacoux C,2020. |
| Evidence: |
[AIPP] [ICWHO] [RS-EPT-CBR] [TIM] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [1] Rhodius VA., et al., 2005 [3] Salgado H, et al., 2012 |
| Name: | bamA |
| Synonym(s): | ecfK, yaeT |
| Gene(s): | bamA Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for bamA . This structure could regulate the expression of the gene, as observed for hemL gene expression 31964733. |
| Promoter | |
| Name: | bamAp |
| +1: | 197821 |
| Sigma Factor: | Sigma24 Sigmulon |
| Distance from start of the gene: | 107 |
| Sequence: |
ctgctgttccttgcgatcgaaaagatcaagggcggaccggtatccgagcgggttcaagacTtttgttatcgcattggctcg -35 -10 +1 |
| Note(s): | It was suggested, from high-throughput screening of maps of transcriptional start sites (TSSs), that the TSS (197821) assigned for this promoter is an RNA processing site Lacoux C,2020. |
| Evidence: |
[HIPP] [ICWHO] [TIM] |
| Reference(s): |
[4] Dartigalongue C., et al., 2001 [2] Huerta AM., et al., 2003 |
| Name: | hlpA-lpxD-fabZ-lpxA | |||||||||
| Gene(s): | skp, lpxD, fabZ, lpxA Genome Browser M3D Gene expression COLOMBOS | |||||||||
| Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
| Reference(s): | [4] Dartigalongue C., et al., 2001 | |||||||||
| Promoter | ||||||||||
| Name: | hlpAp | |||||||||
| +1: | 200455 | |||||||||
| Sigma Factor: | Sigma24 Sigmulon | |||||||||
| Distance from start of the gene: | 27 | |||||||||
| Sequence: |
cgatgactttaggcgatcaatataagatcgccgggccacgcaaagaactgcaccctccggTgcaaatgggatggtaaggag -35 -10 +1 |
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| Evidence: |
[HIPP] [ICWHO] [TIM] |
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| Reference(s): |
[4] Dartigalongue C., et al., 2001 [2] Huerta AM., et al., 2003 |
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| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
| remote | CpxR-Phosphorylated | activator | hlpAp | 200347 | 200361 | -101.0 | tttaacatcgGTAAAACCTGGTAAGTgttctccaca | nd | [APIORCISFBSCS], [GEA] | [4] |
| Name: | lpxD |
| Gene(s): | lpxD Genome Browser M3D Gene expression COLOMBOS |
| Promoter | |
| Name: | lpxDp |
| +1: | 200960 |
| Sigma Factor: | Sigma24 Sigmulon |
| Distance from start of the gene: | 11 |
| Sequence: |
acgccgttgcttacaacagcagcgatgtaaaagacatcactgccgacgtactgaaacaggTtaaataagtaatgccttcaa -35 -10 +1 |
| Note(s): | It was suggested, from high-throughput screening of maps of transcriptional start sites (TSSs), that the TSS (200960) assigned for this promoter is an RNA processing site and a new TSS was mapped (200962) for this promoter Lacoux C,2020. |
| Evidence: |
[HIPP] [ICWHO] [TIM] |
| Reference(s): |
[4] Dartigalongue C., et al., 2001 [2] Huerta AM., et al., 2003 |
| Reference(s) |
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|---|---|
[AIPP] Automated inference of promoter position