Name: |
lgoR |
Gene(s): |
lgoR
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
In the presence of D-glucuronate, the binding affinity of ExuR is higher than that of UxuR to the lgoR/lgoD intergenic region. Under the same conditions, the binding of ExuR to the regulatory region is affected by the presence of UxuR Tutukina MN,2016 |
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
lgoRp4 |
+1: |
4595947 |
Sigma Factor: |
Sigma24 Sigmulon |
Distance from start of the gene: |
96
|
Sequence: |
aacattcatcgtagacatgattcggctctccactttttgttgccttagatatcaatgaaaAtgaaaaatggcagcggaacg -35 -10 +1
|
Evidence: |
[ICWHO]
|
Reference(s): |
[1] Huerta AM., et al., 2003
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
UxuR
|
repressor |
lgoRp4 |
4595807
|
4595824
|
132.5
|
tttacgccacAATGTGATTAACCAGGTCattgatgata |
nd
|
[GEA], [BPP]
|
[3]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
CRP-cyclic-AMP |
activator |
lgoRp4 |
4595902
|
4595915
|
40.0
|
aaaatcttttTTGTGAAAACACACgcataaaaat
|
[GEA]
|
[2]
|
UxuR |
repressor |
lgoRp4 |
4595807
|
4595824
|
132.5
|
tttacgccacAATGTGATTAACCAGGTCattgatgata
|
[GEA]
|
[3]
|
ExuR-α-D-galacturonate, α-D-glucuronate |
repressor |
lgoRp4 |
4595807
|
4595824
|
132.5
|
tttacgccacAATGTGATTAACCAGGTCattgatgata
|
nd
|
[4]
|