RegulonDB RegulonDB 10.8: Operon Form
   

ldtC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ldtC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ldtC
Gene(s): ldtC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: ldtCp
+1: 1170417
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 43
Sequence: ttacaaattctttgcacttccctgcactatccgacactgtcaccatccataattcaggctTatctgtttattacaataacc
                      -35                       -10         +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [1] Yamamoto K., et al., 2006
TF binding sites (TFBSs)
[CpxR,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CpxR-Phosphorylated1 activator ldtCp 1170463 1170479 -53.5 catctgcaacATTTACAAATTCTTTGCacttccctgc nd [APIORCISFBSCS], [BPP] [1]
Note(s): 1The consensus of this CpxR-binding site is not located in the same DNA strand as in the ycfSp promoter Yamamoto K,20061The consensus of this CpxR-binding site is not located in the same DNA strand as in the ycfSp promoter Yamamoto K,2006


Evidence    

 [HIPP] Human inference of promoter position

 [TIM] Transcription initiation mapping

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [BPP] Binding of purified proteins


Reference(s)    

 [1] Yamamoto K., Ishihama A., 2006, Characterization of copper-inducible promoters regulated by CpxA/CpxR in Escherichia coli., Biosci Biotechnol Biochem 70(7):1688-95

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