RegulonDB RegulonDB 11.1: Operon Form
   

sutR operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sutR
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: sutR
Gene(s): sutR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Promoter
Name: sutRp
+1: 1506150
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 22
Sequence: gtgcgttatagcgtacaggcaccgtagcatttgtccgttataacgcacaagtgataaactTccgttttgccggaggagtcg
                               -35                -10       +1                   
Evidence: [COMP-HINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[EXP-IPI]
Reference(s): [1] Yamamoto K., et al., 2015
TF binding sites (TFBSs)
[SutR,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal SutR activator sutRp 1506085 1506107 -54.5 acgcatagtcACCTCGTGCGTTATAGCGTACAGgcaccgtagc nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [1]
[SutR,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal SutR repressor sutRp 1506125 1506143 -16.5 agcatttgtcCGTTATAACGCACAAGTGAtaaacttccg nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [1]


Evidence    

 [COMP-HINF] Inferred by a human based on computational evidence

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [EXP-IPI] Inferred from physical interaction

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [COMP-HINF-SIMILAR-TO-CONSENSUS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] Binding of purified proteins


Reference(s)    

 [1] Yamamoto K., Nakano M., Ishihama A., 2015, Regulatory role of transcription factor SutR (YdcN) in sulfur utilization in Escherichia coli., Microbiology 161(Pt 1):99-111

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