RegulonDB RegulonDB 10.7: Operon Form
   

yajG-ampG operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yajG-ampG
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yajG-ampG
Gene(s): ampG, yajG   Genome Browser M3D Gene expression COLOMBOS
Evidence: [CV(LTED/PM)] cross validation(LTED/PM)
[LTED] Length of transcript experimentally determined
[PM] Polar mutation
Reference(s): [1] Lindquist S., et al., 1993
Promoter
Name: yajGp
+1: 454210
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 43
Sequence: catgatgaatttacatgccttacccacttcccctcgccgttggcaatgttatgatggcggGaatttttaccaaacacgctt
                            -35                   -10       +1                   
Evidence: [HIPP]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Lindquist S., et al., 1993
[2] Salgado H, et al., 2012


Transcription unit       
Name: yajG
Gene(s): yajG   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[LTED] Length of transcript experimentally determined
Reference(s): [1] Lindquist S., et al., 1993
Promoter
Name: yajGp
+1: 454210
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 43
Sequence: catgatgaatttacatgccttacccacttcccctcgccgttggcaatgttatgatggcggGaatttttaccaaacacgctt
                            -35                   -10       +1                   
Evidence: [HIPP]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Lindquist S., et al., 1993
[2] Salgado H, et al., 2012
Terminator(s)
Type: rho-independent
Sequence: ggcgtctacaGGCCCGGCTTGCACCGGGCCagagggcaga
Reference(s): [1] Lindquist S., et al., 1993


Transcription unit       
Gene(s): ampG   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [3] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -11.2 454202 454243 ccttacccacTTCCCCTCGCCGTTGGCAATGTTATGATGGCGGGAATTTTTaccaaacacg
  anti-terminator -15.89 454228 454292 gtttcttttaCCAGGGGCGATTATTTCGTCAACATGATGAATTTACATGCCTTACCCACTTCCCCTCGCCGTTGgcaatgttat
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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