RegulonDB RegulonDB 10.7: Operon Form
   

dcyD-tcyLN operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: dcyD-tcyLN
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Gene(s): tcyN, tcyL, dcyD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Reference(s): [1] Chonoles Imlay KR., et al., 2015
Promoter
Name: dcyDp
+1: 1999508
Distance from start of the gene: 28
Sequence: aaagggcgctttcactagcgccttttttatttacgcgttttcagcgtgcataataagaaaAtcacaacaacacacatcgga
Evidence: [HTIM]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Chonoles Imlay KR., et al., 2015
[2] Mendoza-Vargas A., et al., 2009
[3] Salgado H, et al., 2012


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [4] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -14.0 1999537 1999568 taatgacaaaAAAGGGCGCTTTCACTAGCGCCTTTTTTATTtacgcgtttt
  anti-terminator -20.12 1999560 1999630 atggcactctGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCATAATGACAAAAAAGGGCGctttcactag
  anti-anti-terminator -10.4 1999600 1999638 gcaaaaagatGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCtgatgtgacc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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