RegulonDB RegulonDB 10.9: Operon Form
   

yibN-grxC-secB-gpsA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yibN-grxC-secB-gpsA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: secB-gpsA
Gene(s): gpsA, secB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[PM] Polar mutation
Reference(s): [1] Shimizu H., et al., 1997
Promoter
Name: secBp
+1: 3784203
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 75
Sequence: acagcacattggcggctgtgatgacttgtatgcattggatgcacgtggtggactggatccCctgctgaaataacgtgtgaa
                          -35                      -10      +1                   
Evidence: [IHBCE]
[RS-EPT-CBR]
[TIM]
Reference(s): [2] Salgado H, et al., 2012
[3] Seoh HK., et al., 1999
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator secBp 3784254 3784275 -61.5 gttccccagaTTTTTATTGACGCACAGCACATTggcggctgtg nd [APIORCISFBSCS], [BPP], [GEA], [SM] [3], [4]


Transcription unit       
Name: yibN-grxC-secB-gpsA
Gene(s): gpsA, secB, grxC, yibN   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PM] Polar mutation
Reference(s): [3] Seoh HK., et al., 1999
[1] Shimizu H., et al., 1997
Promoter
Name: yibNp
+1: 3785195
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 180
Sequence: acaacctcatactcaagagtcaaaatttgcgtaattttactacagctgaatcgataaaatAgcctctgaagatcaaaatat
                           -35                     -10      +1                   
Evidence: [HIPP]
[IHBCE]
[TIM]
Reference(s): [3] Seoh HK., et al., 1999


Transcription unit       
Name: yibN
Gene(s): yibN   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


Transcription unit       
Name: grxC
Gene(s): grxC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -6.9 3784463 3784487 ttttgctgccGCCCTGCAACATGAAATTTCAGGGtaaaaaaaca
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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