RegulonDB RegulonDB 11.1: Operon Form
   

dgcT operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: dgcT
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ycdT
Gene(s): dgcT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit
[EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Jonas K., et al., 2008
Promoter
Name: ycdTp
+1: 1092841
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 35
Sequence: ttgtttgtgggcggaatttcatattgacaacagtacagttcttatatctattaataatagAaagggatctacaacctacag
                        -35                      -10        +1                   
Evidence: [COMP-AINF]
[COMP-HINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [2] Huerta AM., et al., 2003
[1] Jonas K., et al., 2008


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF] Inferred by a human based on computational evidence

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping


Reference(s)    

 [1] Jonas K., Edwards AN., Simm R., Romeo T., Romling U., Melefors O., 2008, The RNA binding protein CsrA controls cyclic di-GMP metabolism by directly regulating the expression of GGDEF proteins., Mol Microbiol 70(1):236-57

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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